Updates
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Source code and data resources
iAtlas app, tools, and data and annotations
- GitHub: https://github.com/CRI-iAtlas
- GitLab: https://gitlab.com/cri-iatlas
- Synapse: https://www.synapse.org/#!Synapse:syn10337516/wiki/458420
- Immune Subtype Classifier: https://github.com/CRI-iAtlas/ImmuneSubtypeClassifier
TCGA originating sources
- TCGA PanCancer Atlas: https://gdc.cancer.gov/about-data/publications/pancanatlas
- Immune Landscape of Cancer Manuscript Page: https://gdc.cancer.gov/about-data/publications/panimmune
- The Cancer Genome Atlas: http://cancergenome.nih.gov/
- NCI Genomic Data Commons: https://portal.gdc.cancer.gov/
Source for targets of immunotherapy studies
- CRI Landscape of Immuno-Oncology Drug Development: https://www.cancerresearch.org/scientists/immuno-oncology-landscape
Source for data in the Molecular Response to Immune Checkpoint Inhibitor modules:
Workflows
Workflows for characterization of immune environment in cancer
- CWL workflows: https://github.com/CRI-iAtlas/iatlas-workflows
- Docker tools: https://quay.io/organization/cri-iatlas
Manuscripts
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Gibbs DL, Robust classification of Immune Subtypes in Cancer, bioRxiv 2020.01.17.910950
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Thorsson et al. The Immune Landscape of Cancer. Immunity. 2018 Apr 17;48(4):812-830.e14
Organizations
Organizations contributing to iAtlas
- Sage Bionetworks: https://www.sagebionetworks.org
- Institute for Systems Biology: https://www.isbscience.org
- UNC Lineberger: https://unclineberger.org
- Vincent Lab: https://unclineberger.org/vincentlab/
- Cancer Research Institute: https://cancerresearch.org/