Updates

Follow @iatlas_cri on Twitter for latest developments!

Source code and data resources

iAtlas app, tools, and data and annotations

• GitHub: https://github.com/CRI-iAtlas
• GitLab: https://gitlab.com/cri-iatlas
• Synapse: https://www.synapse.org/#!Synapse:syn10337516/wiki/458420
• Immune Subtype Classifier: https://github.com/CRI-iAtlas/ImmuneSubtypeClassifier

TCGA originating sources

• TCGA PanCancer Atlas: https://gdc.cancer.gov/about-data/publications/pancanatlas
• Immune Landscape of Cancer Manuscript Page: https://gdc.cancer.gov/about-data/publications/panimmune
• The Cancer Genome Atlas: http://cancergenome.nih.gov/
• NCI Genomic Data Commons: https://portal.gdc.cancer.gov/

Source for targets of immunotherapy studies

• CRI Landscape of Immuno-Oncology Drug Development: https://www.cancerresearch.org/scientists/immuno-oncology-landscape

Workflows

Workflows for characterization of immune environment in cancer

• CWL workflows: https://github.com/CRI-iAtlas/iatlas-workflows
• Docker tools: https://quay.io/organization/cri-iatlas

Organizations

Organizations contributing to iAtlas

• Sage Bionetworks: https://www.sagebionetworks.org
• Institute for Systems Biology: https://www.isbscience.org
• UNC Lineberger: https://unclineberger.org
• Vincent Lab: https://unclineberger.org/vincentlab/
• Cancer Research Institute: https://cancerresearch.org/