New Release: v1.2.0
New IO-Targets module!
Updated immune subtype classification tool!
R Notebooks detailing subtype classification now available.
General code improvements.
New features include:
Explore the expression of genes that code for immuno-oncological (IO) targets .
Possible thanks to collaboration with the Cancer Research Institute (CRI).
This module allows you to explore the tumor expression of some of the immuno-oncological (IO) targets discussed in Cancer Research Institute Clinicial Accelerator publications.
[The landscape of IO drug development] (https://www.cancerresearch.org/scientists/clinical-accelerator/landscape-of-immuno-oncology-drug-development)
New tool version:
Now the subtypes are aligned with the subtypes published as part of the PanCancer Immune landscape manuscript. Also improved the normalization scheme. It also appears that using gene quantifications other than RSEM may result in errors of subtype classification. Work to fix this is underway.
Notebooks are available at [github] (https://github.com/Gibbsdavidl/Immune-Subtype-Clustering).
- Update to tcga subtype choices